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Lesson 7: Image Segmentation — Semantic, Instance & Panoptic

3 types of segmentation: semantic (pixel classification), instance (distinguishing each object), panoptic (combination). U-Net, Mask R-CNN. Hands-on with SegFormer. Applications: medical, self-driving, maps.

🧠 AI & ML — Lesson 6 Lesson 7: Image Segmentation — Semantic, Instance & Panoptic

Computer Vision with Deep Learning: From CNN to Vision Transformer

Part 3: Segmentation & Modern CV

xdev.asia

Introduction

Object Detection gives us a bounding box — a rectangle surrounding the object. But many applications need more precision: medicine needs to know the right area of ​​a tumor, self-driving cars need to know the right pixel which is the road and which is the sidewalk. That is Image Segmentation.

🎯 Segmentation = classifying each pixel in the image. Much more detailed than detection.


1. Three types of Segmentation

1.1 Comparison

Input Image: 2 con mèo + 1 nền cỏ

Semantic Segmentation:    Tất cả pixels mèo → "cat" (KHÔNG phân biệt 2 con)
                          Tất cả pixels cỏ  → "grass"

Instance Segmentation:    Mèo 1 → "cat #1", Mèo 2 → "cat #2" (PHÂN BIỆT)
                          Cỏ → không xử lý (chỉ "things")

Panoptic Segmentation:    Mèo 1 → "cat #1", Mèo 2 → "cat #2"
                          Cỏ → "grass" (xử lý CẢ "things" lẫn "stuff")
TypeDistinguishing objects?"Stuff" (background)?Use cases
Semantic❌✅Self-driving (road, sky), medical
Instance✅❌Robot, counting objects
Panoptic✅✅Comprehensive scene understanding

1.2 Metrics for Segmentation

"""IoU (Intersection over Union) cho Segmentation"""
import numpy as np

def pixel_iou(pred_mask, gt_mask, class_id):
    """IoU cho 1 class cụ thể"""
    pred = (pred_mask == class_id)
    gt = (gt_mask == class_id)

    intersection = np.logical_and(pred, gt).sum()
    union = np.logical_or(pred, gt).sum()

    return intersection / union if union > 0 else 0

def mean_iou(pred_mask, gt_mask, num_classes):
    """Mean IoU: trung bình IoU tất cả classes"""
    ious = []
    for c in range(num_classes):
        iou = pixel_iou(pred_mask, gt_mask, c)
        ious.append(iou)
    return np.mean(ious)

# Ví dụ:
# mIoU = 0.75 → trung bình, model cover 75% diện tích đúng

2. Segmentation Architecture

2.1 U-Net — King of Medical Image Segmentation

Encoder (downsampling)          Decoder (upsampling)
┌─────────────────┐            ┌─────────────────┐
│ Conv 3×3, 64    │────────────│ Conv 3×3, 64    │  ← Skip Connection
│ MaxPool 2×2     │            │ UpConv 2×2      │
├─────────────────┤            ├─────────────────┤
│ Conv 3×3, 128   │────────────│ Conv 3×3, 128   │  ← Skip Connection
│ MaxPool 2×2     │            │ UpConv 2×2      │
├─────────────────┤            ├─────────────────┤
│ Conv 3×3, 256   │────────────│ Conv 3×3, 256   │  ← Skip Connection
│ MaxPool 2×2     │            │ UpConv 2×2      │
├─────────────────┤            ├─────────────────┤
│     Bottleneck (512)         │                     
└─────────────────┘            └─────────────────┘
"""U-Net implementation simplified"""
import torch
import torch.nn as nn

class UNet(nn.Module):
    def __init__(self, in_channels=3, num_classes=2):
        super().__init__()

        # Encoder
        self.enc1 = self._double_conv(in_channels, 64)
        self.enc2 = self._double_conv(64, 128)
        self.enc3 = self._double_conv(128, 256)

        self.pool = nn.MaxPool2d(2, 2)

        # Bottleneck
        self.bottleneck = self._double_conv(256, 512)

        # Decoder
        self.up3 = nn.ConvTranspose2d(512, 256, 2, stride=2)
        self.dec3 = self._double_conv(512, 256)  # 256 + 256 = 512 input
        self.up2 = nn.ConvTranspose2d(256, 128, 2, stride=2)
        self.dec2 = self._double_conv(256, 128)
        self.up1 = nn.ConvTranspose2d(128, 64, 2, stride=2)
        self.dec1 = self._double_conv(128, 64)

        # Output
        self.out = nn.Conv2d(64, num_classes, 1)

    def _double_conv(self, in_ch, out_ch):
        return nn.Sequential(
            nn.Conv2d(in_ch, out_ch, 3, padding=1),
            nn.BatchNorm2d(out_ch),
            nn.ReLU(inplace=True),
            nn.Conv2d(out_ch, out_ch, 3, padding=1),
            nn.BatchNorm2d(out_ch),
            nn.ReLU(inplace=True),
        )

    def forward(self, x):
        # Encoder
        e1 = self.enc1(x)
        e2 = self.enc2(self.pool(e1))
        e3 = self.enc3(self.pool(e2))

        # Bottleneck
        b = self.bottleneck(self.pool(e3))

        # Decoder + Skip Connections
        d3 = self.dec3(torch.cat([self.up3(b), e3], dim=1))
        d2 = self.dec2(torch.cat([self.up2(d3), e2], dim=1))
        d1 = self.dec1(torch.cat([self.up1(d2), e1], dim=1))

        return self.out(d1)

model = UNet(in_channels=3, num_classes=5)
x = torch.randn(1, 3, 256, 256)
print(f"Output shape: {model(x).shape}")  # (1, 5, 256, 256)

2.2 SegFormer — Transformer for Segmentation

"""SegFormer: model segmentation hiện đại dùng Transformer"""
from transformers import SegformerForSemanticSegmentation, SegformerImageProcessor
from PIL import Image
import torch

# Load pretrained SegFormer
processor = SegformerImageProcessor.from_pretrained(
    "nvidia/segformer-b2-finetuned-ade-512-512"
)
model = SegformerForSemanticSegmentation.from_pretrained(
    "nvidia/segformer-b2-finetuned-ade-512-512"
)

# Inference
image = Image.open("street_scene.jpg")
inputs = processor(images=image, return_tensors="pt")

with torch.no_grad():
    outputs = model(**inputs)

# Upscale to original size
logits = torch.nn.functional.interpolate(
    outputs.logits,
    size=image.size[::-1],  # (H, W)
    mode="bilinear",
    align_corners=False,
)

# Predicted mask
predicted_mask = logits.argmax(dim=1).squeeze().numpy()
print(f"Mask shape: {predicted_mask.shape}")  # (H, W)
print(f"Classes found: {set(predicted_mask.flatten())}")

2.3 YOLO Segmentation

"""Instance Segmentation với YOLO"""
from ultralytics import YOLO

model = YOLO("yolo11n-seg.pt")  # Segmentation model

results = model("people_park.jpg")

for result in results:
    # Masks
    if result.masks is not None:
        masks = result.masks.data.cpu().numpy()  # (N, H, W)
        print(f"Found {len(masks)} instance masks")

        for i, (mask, box) in enumerate(zip(masks, result.boxes)):
            class_name = result.names[int(box.cls)]
            confidence = box.conf[0].item()
            mask_area = mask.sum()  # Pixels in mask
            print(f"  {class_name} ({confidence:.1%}): {mask_area:.0f} pixels")

    # Visualize
    result.show()

3. Hands-on: Medical Image Segmentation

"""Semantic Segmentation cho ảnh y tế — ví dụ: segment tumor"""
import torch
import torch.nn as nn
from torch.utils.data import Dataset, DataLoader
import cv2
import numpy as np

class MedicalDataset(Dataset):
    def __init__(self, image_paths, mask_paths, size=256):
        self.image_paths = image_paths
        self.mask_paths = mask_paths
        self.size = size

    def __len__(self):
        return len(self.image_paths)

    def __getitem__(self, idx):
        # Read image
        img = cv2.imread(self.image_paths[idx])
        img = cv2.cvtColor(img, cv2.COLOR_BGR2RGB)
        img = cv2.resize(img, (self.size, self.size))
        img = img.astype(np.float32) / 255.0
        img = torch.from_numpy(img).permute(2, 0, 1)  # (C, H, W)

        # Read mask
        mask = cv2.imread(self.mask_paths[idx], cv2.IMREAD_GRAYSCALE)
        mask = cv2.resize(mask, (self.size, self.size), interpolation=cv2.INTER_NEAREST)
        mask = torch.from_numpy(mask).long()

        return img, mask

# Training với Dice Loss (tốt cho medical segmentation)
class DiceLoss(nn.Module):
    def forward(self, pred, target, smooth=1e-6):
        pred = torch.softmax(pred, dim=1)
        target_one_hot = torch.nn.functional.one_hot(
            target, num_classes=pred.shape[1]
        ).permute(0, 3, 1, 2).float()

        intersection = (pred * target_one_hot).sum(dim=(2, 3))
        union = pred.sum(dim=(2, 3)) + target_one_hot.sum(dim=(2, 3))
        dice = (2 * intersection + smooth) / (union + smooth)

        return 1 - dice.mean()

4. Practical application

🏥 Y tế:           Segment khối u, tế bào, cơ quan
🚗 Tự lái:         Segment đường, vỉa hè, biển báo, người
🗺️ Bản đồ:        Segment buildings, roads từ ảnh vệ tinh
🌾 Nông nghiệp:    Segment cây trồng, detect vùng bệnh
📱 Điện thoại:     Portrait mode (tách người khỏi nền)
🏭 Công nghiệp:    Kiểm tra bề mặt sản phẩm

Summary

ConceptsRemember
SemanticClassify each pixel → class (regardless of instances)
InstanceDistinguishing individual objects
PanopticCombine semantic + instance
U-NetEncoder-Decoder + Skip connections (medical)
SegFormerTransformer-based, SOTA
YOLO-SegInstance segmentation real-time
Dice LossLoss suitable for segmentation (class imbalance)

General exercises

  1. SegFormer Demo: Run SegFormer pretrained on 5 street photos. Visualize color masks.
  2. YOLO-Seg: Instance segmentation on short videos. Count unique instances.
  3. U-Net Mini: Train simple U-Net on binary dataset (foreground/background).
  4. Mask Overlay: Write a function overlay segmentation mask (semi-transparent) on the original image.

Next article: SAM (Segment Anything) — segment any object without training.